General information
PDB ID 6WRG
Title ESCHERICHIA COLI RNA POLYMERASE AND RRNBP1 PROMOTER PRE-OPEN COMPLEX WITH DKSA/PPGPP
PDB header TRANSCRIPTION/DNA
Date 2020-04-29
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.58
Kind dna
Organism ESCHERICHIA COLI (STRAIN K12), ESCHERICHIA COLI K-12
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6wrg.pdb ABCDEFM XY 0
Biounits:
6wrg.pdb1.pdb ABCDEFM XY 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_A_bac Domain P0A7Z4_53-173 9.2e-24 1 No_clan A 58 178   
RNA_pol_L Domain P0A7Z4_24-223 1.2e-22 1 CL0509 A 29 228   
RNA_pol_A_bac Domain P0A7Z4_53-181 8.6e-24 1 No_clan B 58 185   
RNA_pol_L Domain P0A7Z4_29-228 1.1e-22 1 CL0509 B 29 228   
RNA_pol_Rpb2_6 Domain P0A8V2_717-1264 3.2e-160 1 CL0410 C 717 1264   
RNA_pol_Rpb2_3 Domain P0A8V2_513-581 1.7e-29 1 No_clan C 513 581 X  L-Mj 
RNA_pol_Rpb2_45 Domain P0A8V2_591-656 2.1e-27 1 No_clan C 591 656   
RNA_pol_Rpb2_7 Domain P0A8V2_1266-1342 3.1e-27 1 No_clan C 1266 1342   
RNA_pol_Rpb2_2 Domain P0A8V2_329-454 6.1e-15 1 No_clan C 329 454   
RNA_pol_Rpb2_2 Domain P0A8V2_151-276 2.7e-07 1 No_clan C 151 276   
RNA_pol_Rpb1_1 Domain P0A8T7_2-330 7.9e-90 1 No_clan D 14 342 XY  L-Bb 
RNA_pol_Rpb1_5 Domain P0A8T7_754-1305 6e-78 1 No_clan D 766 1317 X  L-Bb 
RNA_pol_Rpb1_2 Domain P0A8T7_374-474 4.3e-27 1 No_clan D 386 486   
RNA_pol_Rpb1_3 Domain P0A8T7_477-632 5.2e-27 1 No_clan D 489 644   
RNA_pol_Rpb1_4 Domain P0A8T7_661-752 1.5e-18 1 No_clan D 673 764   
RNA_pol_Rpb1_2 Domain P0A8T7_332-389 1.3e-07 1 No_clan D 344 401   
Sigma70_ner Domain P00579_78-207 2.5e-45 1 CL0123 F 167 348   
Sigma70_r2 Domain P00579_239-309 1.1e-21 1 CL0123 F 379 449 XY  H-Bb H-Mj H-Mn 
Sigma70_r4 Domain P00579_407-460 3.7e-19 1 CL0123 F 547 600 XY  H-Bb H-Mj 
Sigma70_ner Domain P00579_49-82 3e-09 1 CL0123 F 137 215   
RNA_pol_Rpb2_1 Family P0A8V2_26-500 2.6e-58 1 No_clan C 26 500   
RNA_pol_Rpb6 Family P0A800_8-60 3.7e-17 1 No_clan E 8 60   
Sigma70_r3 Family P00579_318-395 8.1e-30 1 CL0123 F 458 535 Y  H-Bb 
Sigma70_r1_2 Family P00579_7-40 1.8e-12 1 No_clan F 96 129 X   
zf-dskA_traR Family P0ABS1_101-136 5.5e-10 1 CL0167 M 109 144   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=1-236 C cytoplasm
A/B=1-236 C cytosol
A/B=1-236 C membrane
A/B=1-236 F DNA binding
A/B=1-236 F DNA-directed 5'-3' RNA polymerase activity
A/B=1-236 F protein dimerization activity
A/B=1-236 P transcription, DNA-templated
C=1-1342 C cytoplasm
C=1-1342 C cytosol
C=1-1342 C membrane
C=1-1342 F DNA binding
C=1-1342 F DNA-directed 5'-3' RNA polymerase activity
C=1-1342 F ribonucleoside binding
C=1-1342 P response to antibiotic
C=1-1342 P transcription, DNA-templated
D=1-1407 C cytoplasm
D=1-1407 C cytosol
D=1-1407 C membrane
D=1-1407 F DNA binding
D=1-1407 F DNA-directed 5'-3' RNA polymerase activity
D=1-1407 F magnesium ion binding
D=1-1407 F zinc ion binding
D=1-1407 P response to antibiotic
D=1-1407 P transcription, DNA-templated
E=1-91 C cytosol
E=1-91 C RNA polymerase complex
E=1-91 F DNA binding
E=1-91 F DNA-directed 5'-3' RNA polymerase activity
E=1-91 P protein-containing complex assembly
E=1-91 P transcription, DNA-templated
F=1-613 C cytosol
F=1-613 F DNA binding
F=1-613 F DNA-binding transcription factor activity
F=1-613 F sigma factor activity
F=1-613 P response to heat
F=1-613 P transcription initiation from bacterial-type RNA polymerase promoter
M=1-151 C cytoplasm
M=1-151 C cytosol
M=1-151 F zinc ion binding
M=1-151 P regulation of gene expression
Sequences
Download file with secondary structure created by Stride  
6wrg.pdb1.pdb:   [ download sequences in FASTA format ]
X (dna): 
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Y (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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M (protein): 
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