General information
PDB ID 6XAV
Title CRYOEM STRUCTURE OF E. COLI RHO-DEPENDENT TRANSCRIPTION PRE- TERMINATION COMPLEX BOUND WITH NUSG
PDB header TRANSCRIPTION
Date 2020-06-04
Experimental method ELECTRON MICROSCOPY
Resolution (A) 7.7
Kind hybrid
Organism ESCHERICHIA COLI K-12
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6xav.pdb LWKHIJGCABDEF NT R 0
Biounits:
6xav.pdb1.pdb LWKHIJGCABDEF NT R 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Rho_RNA_bind Domain P0AG30_51-125 4.5e-32 1 CL0021 A 51 125   
ATP-synt_ab Domain P0AG30_158-365 9.5e-17 1 CL0023 A 158 365   
Rho_RNA_bind Domain P0AG30_51-125 2.3e-29 1 CL0021 B 51 125 T   
ATP-synt_ab Domain P0AG30_158-365 4.8e-21 1 CL0023 B 158 365   
Rho_N Domain P0AG30_5-47 1.3e-15 1 CL0306 B 5 48   
Rho_RNA_bind Domain P0AG30_51-125 2.3e-29 1 CL0021 C 51 125   
ATP-synt_ab Domain P0AG30_158-365 8.4e-21 1 CL0023 C 158 365   
Rho_N Domain P0AG30_5-47 8.5e-17 1 CL0306 C 5 47   
Rho_RNA_bind Domain P0AG30_51-125 2.3e-29 1 CL0021 D 51 125   
ATP-synt_ab Domain P0AG30_158-365 1.8e-22 1 CL0023 D 158 365   
Rho_N Domain P0AG30_5-47 8.6e-17 1 CL0306 D 5 47   
Rho_RNA_bind Domain P0AG30_51-125 2.3e-29 1 CL0021 E 51 125   
ATP-synt_ab Domain P0AG30_158-365 1.8e-22 1 CL0023 E 158 365   
Rho_N Domain P0AG30_5-47 8.6e-17 1 CL0306 E 5 47   
Rho_RNA_bind Domain P0AG30_51-125 4.3e-32 1 CL0021 F 51 125   
Rho_N Domain P0AG30_5-47 6.7e-17 1 CL0306 F 5 47   
ATP-synt_ab Domain P0AG30_158-354 6.5e-16 1 CL0023 F 158 353   
NusA_N Domain P0AFF6_25-124 7e-30 1 No_clan G 25 124   
RNA_pol_A_bac Domain P0A7Z4_58-186 7.4e-24 1 No_clan H 58 186   
RNA_pol_L Domain P0A7Z4_29-228 1e-22 1 CL0509 H 29 228   
RNA_pol_Rpb2_6 Domain P0A8V2_717-1264 9.3e-147 1 CL0410 I 717 1264 RT   
RNA_pol_Rpb2_3 Domain P0A8V2_513-581 1.7e-29 1 No_clan I 513 581 NRT  L-Bb L-Mn 
RNA_pol_Rpb2_45 Domain P0A8V2_591-656 2e-27 1 No_clan I 591 656   
RNA_pol_Rpb2_7 Domain P0A8V2_1266-1342 3e-27 1 No_clan I 1266 1342 T   
RNA_pol_Rpb2_2 Domain P0A8V2_329-454 5.9e-15 1 No_clan I 329 454 N   
RNA_pol_Rpb2_2 Domain P0A8V2_151-276 2.6e-07 1 No_clan I 151 276 N   
RNA_pol_Rpb1_1 Domain P0A8T7_15-342 7.6e-90 1 No_clan J 14 342 NRT  H-Bb 
RNA_pol_Rpb1_5 Domain P0A8T7_766-1317 2.9e-69 1 No_clan J 766 1317 NT  H-Bb L-Bb 
RNA_pol_Rpb1_2 Domain P0A8T7_386-486 4.2e-27 1 No_clan J 386 486 R   
RNA_pol_Rpb1_3 Domain P0A8T7_489-644 5e-27 1 No_clan J 489 644   
RNA_pol_Rpb1_4 Domain P0A8T7_673-764 1.5e-18 1 No_clan J 673 764   
RNA_pol_Rpb1_2 Domain P0A8T7_344-401 1.3e-07 1 No_clan J 344 401 T   
RNA_pol_A_bac Domain P0A7Z4_58-186 1.2e-23 1 No_clan K 56 186   
RNA_pol_L Domain P0A7Z4_29-228 7.9e-22 1 CL0509 K 29 228   
RNA_pol_A_CTD Domain P0A7Z4_264-309 4.3e-18 1 CL0198 K 232 309   
NusG Domain P0AFG0_7-112 1.6e-21 1 CL0439 L 7 112 N   
RNA_pol_Rpb2_1 Family P0A8V2_26-500 2.5e-58 1 No_clan I 26 500 N   
RNA_pol_Rpb6 Family P0A800_8-60 1.1e-15 1 No_clan W 8 56   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
6xav.pdb1.pdb:   [ download sequences in FASTA format ]
N (dna): 
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T (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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W (protein): 
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R (rna): 
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