General information
PDB ID 6Y5D
Title STRUCTURE OF HUMAN CGAS (K394E) BOUND TO THE NUCLEOSOME
PDB header IMMUNE SYSTEM
Date 2020-02-25
Experimental method ELECTRON MICROSCOPY
Resolution (A) 4.1
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6y5d.pdb ABCDEFGHKLMNOPQRST IJUV 0
Biounits:
6y5d.pdb1.pdb ABCDEFGHKLMNOPQRST IJUV 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Histone Domain Q71DI3_38-132 2.7e-45 1 CL0012 A 39 132 IJ  H-Bb H-Mj S-Bb L-Bb L-Mn 
CENP-T_C Domain P62805_26-99 4.6e-08 1 CL0012 B 26 99 IJ  S-Bb L-Bb 
Histone Domain Q6FI13_11-91 1.7e-16 1 CL0012 C 12 91 IJ  H-Bb S-Bb L-Bb 
Histone Domain O60814_31-102 2e-21 1 CL0012 D 33 102 IJ  H-Bb S-Bb L-Bb 
Histone Domain Q71DI3_38-132 2.7e-45 1 CL0012 E 39 132 IJ  H-Bb S-Bb L-Bb L-Mn 
CENP-T_C Domain P62805_19-99 4.9e-08 1 CL0012 F 26 99 IJ  S-Bb L-Bb 
Histone Domain Q6FI13_11-91 1.8e-16 1 CL0012 G 12 91 IJ  H-Bb S-Bb L-Bb 
Histone Domain O60814_31-102 1.1e-21 1 CL0012 H 32 102 IJ  H-Bb L-Bb 
Histone Domain Q71DI3_38-132 2.7e-45 1 CL0012 M 39 132 UV  H-Bb S-Bb L-Bb L-Mn 
CENP-T_C Domain P62805_26-99 4.4e-08 1 CL0012 N 27 99 UV  H-Bb L-Bb 
Histone Domain Q6FI13_17-91 2.5e-16 1 CL0012 O 14 91 V  H-Bb S-Bb L-Bb 
Histone Domain O60814_36-102 8.6e-21 1 CL0012 P 36 102 UV  H-Bb L-Bb 
Histone Domain Q71DI3_38-132 2.6e-44 1 CL0012 Q 41 132 UV  H-Bb H-Mj S-Bb L-Bb L-Mn 
CENP-T_C Domain P62805_26-99 4.1e-08 1 CL0012 R 27 99 UV  S-Bb L-Bb 
Histone Domain Q6FI13_11-91 1.5e-16 1 CL0012 S 12 91 UV  H-Bb S-Bb 
Histone Domain O60814_31-102 2e-21 1 CL0012 T 33 102 UV  H-Bb L-Bb 
Histone_H2A_C Family Q6FI13_92-120 2.9e-16 1 No_clan C 92 118   
Histone_H2A_C Family Q6FI13_92-120 3.4e-17 1 No_clan G 92 119   
Mab-21 Family Q8N884_214-510 6e-80 1 No_clan K 214 510 IV  H-Bb 
Mab-21 Family Q8N884_214-510 6e-80 1 No_clan L 214 510 IJU  H-Bb L-Bb L-Mn 
Histone_H2A_C Family Q6FI13_92-120 2.8e-16 1 No_clan O 92 118   
Histone_H2A_C Family Q6FI13_92-111 5.2e-13 1 No_clan S 92 113   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
6y5d.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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U (dna): 
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V (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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