General information
PDB ID 6Z9P
Title TRANSCRIPTION TERMINATION INTERMEDIATE COMPLEX 1
PDB header TRANSCRIPTION
Date 2020-06-04
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.9
Kind hybrid
Organism ESCHERICHIA COLI, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6z9p.pdb GabcdefAUVWXY KL R 0
Biounits:
6z9p.pdb1.pdb GabcdefAUVWXY KL R 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
NusA_N Domain C3SSN7_4-124 8.9e-37 1 No_clan A 4 124 L   
Rho_RNA_bind Domain A0A0A0GPI6_75-149 5.9e-32 1 CL0021 a 51 125 L   
KH_5 Domain C3SSN7_230-298 1.4e-27 1 CL0007 A 230 298   
ATP-synt_ab Domain A0A0A0GPI6_182-389 1.8e-22 1 CL0023 a 158 365   
Rho_N Domain A0A0A0GPI6_29-71 8.6e-17 1 CL0306 a 5 47   
HHH_5 Domain C3SSN7_431-487 4e-10 1 CL0198 A 431 487   
S1 Domain C3SSN7_131-197 0.00018 1 CL0021 A 131 197   
Rho_RNA_bind Domain A0A0A0GPI6_75-149 5.9e-32 1 CL0021 b 51 125   
ATP-synt_ab Domain A0A0A0GPI6_182-389 1.8e-22 1 CL0023 b 158 365   
Rho_N Domain A0A0A0GPI6_29-71 8.6e-17 1 CL0306 b 5 47   
Rho_RNA_bind Domain A0A0A0GPI6_75-149 5.9e-32 1 CL0021 c 51 125   
ATP-synt_ab Domain A0A0A0GPI6_182-389 1.8e-22 1 CL0023 c 158 365   
Rho_N Domain A0A0A0GPI6_29-71 8.6e-17 1 CL0306 c 5 47   
Rho_RNA_bind Domain A0A0A0GPI6_75-149 5.9e-32 1 CL0021 d 51 125   
ATP-synt_ab Domain A0A0A0GPI6_182-389 1.8e-22 1 CL0023 d 158 365   
Rho_N Domain A0A0A0GPI6_29-71 8.6e-17 1 CL0306 d 5 47   
Rho_RNA_bind Domain A0A0A0GPI6_75-149 5.9e-32 1 CL0021 e 51 125   
ATP-synt_ab Domain A0A0A0GPI6_182-389 1.8e-22 1 CL0023 e 158 365   
Rho_N Domain A0A0A0GPI6_29-71 8.6e-17 1 CL0306 e 5 47   
Rho_RNA_bind Domain A0A0A0GPI6_75-149 5.9e-32 1 CL0021 f 51 125   
ATP-synt_ab Domain A0A0A0GPI6_182-389 1.8e-22 1 CL0023 f 158 365   
Rho_N Domain A0A0A0GPI6_29-71 8.6e-17 1 CL0306 f 5 47   
NusG Domain C3SID2_7-112 3.9e-29 1 CL0439 G 7 112 KL   
RNA_pol_A_CTD Domain P0A7Z4_243-309 7.8e-24 1 CL0198 U 243 309   
RNA_pol_A_bac Domain P0A7Z4_58-186 1.8e-23 1 No_clan U 58 186   
RNA_pol_L Domain P0A7Z4_29-228 3.6e-22 1 CL0509 U 29 228   
RNA_pol_A_bac Domain P0A7Z4_58-186 9.3e-24 1 No_clan V 58 185   
RNA_pol_L Domain P0A7Z4_29-228 1.3e-22 1 CL0509 V 29 228   
RNA_pol_Rpb2_6 Domain P0A8V4_717-1264 3.2e-160 1 CL0410 X 717 1264 R   
RNA_pol_Rpb2_3 Domain P0A8V4_513-581 1.7e-29 1 No_clan X 513 581 KL   
RNA_pol_Rpb2_45 Domain P0A8V4_591-656 2.1e-27 1 No_clan X 591 656   
RNA_pol_Rpb2_7 Domain P0A8V4_1266-1341 4.5e-27 1 No_clan X 1266 1341 L   
RNA_pol_Rpb2_2 Domain P0A8V4_329-454 6.1e-15 1 No_clan X 329 454   
RNA_pol_Rpb2_2 Domain P0A8V4_151-276 2.7e-07 1 No_clan X 151 276 L   
RNA_pol_Rpb1_1 Domain C3SIA2_16-342 1.8e-89 1 No_clan Y 16 342 KLR   
RNA_pol_Rpb1_5 Domain C3SIA2_766-1317 6e-78 1 No_clan Y 766 1317 KL   
RNA_pol_Rpb1_2 Domain C3SIA2_386-486 4.2e-27 1 No_clan Y 386 486 RL   
RNA_pol_Rpb1_3 Domain C3SIA2_489-644 5.1e-27 1 No_clan Y 489 644   
RNA_pol_Rpb1_4 Domain C3SIA2_673-764 1.5e-18 1 No_clan Y 673 764   
RNA_pol_Rpb1_2 Domain C3SIA2_344-401 1.3e-07 1 No_clan Y 344 401 L   
RNA_pol_Rpb6 Family P0A800_8-60 4.1e-17 1 No_clan W 8 60   
RNA_pol_Rpb2_1 Family P0A8V4_26-500 2.6e-58 1 No_clan X 26 500 KL   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
6z9p.pdb1.pdb:   [ download sequences in FASTA format ]
K (dna): 
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L (dna): 
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a (protein): 
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b (protein): 
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c (protein): 
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d (protein): 
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e (protein): 
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f (protein): 
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G (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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X (protein): 
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Y (protein): 
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R (rna): 
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