General information
PDB ID 6ZHE
Title CRYO-EM STRUCTURE OF DNA-PK DIMER
PDB header DNA BINDING PROTEIN
Date 2020-06-23
Experimental method ELECTRON MICROSCOPY
Resolution (A) 7.24
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6zhe.pdb ABCFGH JIDE 0
Biounits:
6zhe.pdb1.pdb ABCFGH JIDE 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
NUC194 Domain 7.4e-68 1 No_clan A 1816 2085
NUC194 Domain 4.1e-50 1 No_clan A 1986 2202
Ku_N Domain P12956_37-256 2.2e-70 1 CL0128 B 37 265 E   
Ku Domain P12956_263-468 1e-50 1 CL0616 B 263 468 E   
Ku_N Domain P13010_9-244 1.7e-61 1 CL0128 C 9 244   
Ku Domain P13010_253-453 1.8e-43 1 CL0616 C 253 453 D  L-Bb 
Ku_PK_bind Domain P13010_593-706 5.3e-30 1 No_clan C 593 706   
NUC194 Domain 7.3e-68 1 No_clan F 1816 2085
NUC194 Domain 4e-50 1 No_clan F 1986 2202
Ku_N Domain P12956_37-256 2.2e-70 1 CL0128 G 37 265 I  S-Bb 
Ku Domain P12956_263-468 1e-50 1 CL0616 G 263 468 I  L-Mn 
Ku_N Domain P13010_9-244 1.7e-61 1 CL0128 H 9 244   
Ku Domain P13010_253-453 1.8e-43 1 CL0616 H 253 453 J  L-Bb 
Ku_PK_bind Domain P13010_593-706 5.3e-30 1 No_clan H 593 706   
DNAPKcs_CC5 Family 5.2e-199 1 No_clan A 2213 2768
PI3_PI4_kinase Family P78527_3747-4015 4e-65 1 CL0016 A 3747 4015   
DNAPKcs_CC5 Family 6.5e-55 1 No_clan A 2767 2898
FATC Family P78527_4097-4128 1.7e-08 1 No_clan A 4097 4128   
Ku_C Family P12956_472-534 9e-23 1 No_clan B 472 534   
Ku_C Family P13010_476-569 9.4e-19 1 No_clan C 476 569   
DNAPKcs_CC5 Family 1.6e-196 1 No_clan F 2213 2768
PI3_PI4_kinase Family P78527_3747-4015 4e-65 1 CL0016 F 3747 4015   
DNAPKcs_CC5 Family 1.8e-55 1 No_clan F 2591 2898
FATC Family P78527_4097-4128 1.7e-08 1 No_clan F 4097 4128   
Ku_C Family P12956_472-534 9e-23 1 No_clan G 472 534   
Ku_C Family P13010_476-569 9.3e-19 1 No_clan H 476 569   
FAT Repeat P78527_3023-3470 2.9e-69 1 CL0020 A 3023 3470   
FAT Repeat P78527_3023-3470 2.9e-67 1 CL0020 F 3023 3470   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
6zhe.pdb1.pdb:   [ download sequences in FASTA format ]
D (dna): 
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E (dna): 
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I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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