General information
PDB ID 7CKQ
Title THE CRYO-EM STRUCTURE OF B. SUBTILIS BMRR TRANSCRIPTION ACTIVATION COMPLEX
PDB header TRANSCRIPTION
Date 2020-07-18
Experimental method ELECTRON MICROSCOPY
Resolution (A) 4.4
Kind dna
Organism BACILLUS SUBTILIS (STRAIN 168), SYNTHETIC CONSTRUCT
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb7ckq.pdb ABCDEFGIH 12 0
Biounits:
7ckq.pdb1.pdb ABCDEFGIH 12 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_A_bac Domain P20429_53-171 2.3e-24 1 No_clan A 53 179   
RNA_pol_L Domain P20429_26-221 3e-21 1 CL0509 A 26 221   
RNA_pol_A_bac Domain P20429_53-171 2.2e-24 1 No_clan B 53 179   
RNA_pol_L Domain P20429_26-221 2.8e-21 1 CL0509 B 26 221   
RNA_pol_Rpb2_6 Domain P37870_675-1069 3.2e-164 1 CL0410 C 675 1069   
RNA_pol_Rpb2_2 Domain 1.9e-37 1 No_clan C 140 410 1
RNA_pol_Rpb2_3 Domain P37870_469-537 4.7e-29 1 No_clan C 469 537 1  L-Mj 
RNA_pol_Rpb2_7 Domain P37870_1071-1145 1.1e-26 1 No_clan C 1071 1145   
RNA_pol_Rpb2_45 Domain P37870_547-614 1.3e-25 1 No_clan C 547 614   
RNA_pol_Rpb1_1 Domain P37871_7-331 2.5e-89 1 No_clan D 7 331 12  H-Mj L-Bb 
RNA_pol_Rpb1_5 Domain 1.3e-38 1 No_clan D 770 953
RNA_pol_Rpb1_3 Domain P37871_478-663 3e-34 1 No_clan D 478 663   
RNA_pol_Rpb1_2 Domain P37871_375-475 2.1e-29 1 No_clan D 375 475   
RNA_pol_Rpb1_4 Domain P37871_692-777 2.3e-14 1 No_clan D 692 777   
RNA_pol_Rpb1_5 Domain 1.7e-12 1 No_clan D 959 1131
RNA_pol_Rpb1_2 Domain P37871_333-396 5.9e-09 1 No_clan D 333 396   
Sigma70_r2 Domain P06224_138-208 1.6e-22 1 CL0123 F 138 208 12  H-Bb H-Mj H-Mn 
Sigma70_r4 Domain P06224_306-359 6.9e-20 1 CL0123 F 306 359 12  H-Bb H-Mj L-Bb L-Mj 
GyrI-like Domain P39075_122-277 8.4e-11 1 CL0319 G 122 277   
RpoY Domain O31718_2-60 1.2e-26 1 No_clan H 2 60   
GyrI-like Domain P39075_122-277 8.4e-11 1 CL0319 I 122 277   
RNA_pol_Rpb2_1 Family P37870_28-456 1.5e-30 1 No_clan C 28 456 1   
RNA_pol_Rpb6 Family O35011_8-61 1e-12 1 No_clan E 8 61   
Sigma70_r3 Family P06224_217-294 1.7e-33 1 CL0123 F 217 294 2  H-Bb 
Sigma70_r1_2 Family P06224_100-133 1.7e-16 1 No_clan F 100 133 1   
MerR_1 Family 9.8e-14 1 CL0123 G 6 75 12
MerR_1 Family 9.8e-14 1 CL0123 I 6 75 12
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
7ckq.pdb1.pdb:   [ download sequences in FASTA format ]
1 (dna): 
Click "SHOW" for view sequence
2 (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
C (protein): 
Click "SHOW" for view sequence
D (protein): 
Click "SHOW" for view sequence
E (protein): 
Click "SHOW" for view sequence
F (protein): 
Click "SHOW" for view sequence
G (protein): 
Click "SHOW" for view sequence
H (protein): 
Click "SHOW" for view sequence
I (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2021

text