General information
PDB ID 7KHI
Title ESCHERICHIA COLI RNA POLYMERASE AND RRNBP1 PROMOTER COMPLEX WITH DKSA/PPGPP
PDB header TRANSCRIPTION/DNA
Date 2020-10-21
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.62
Kind dna
Organism ESCHERICHIA COLI (STRAIN K12), ESCHERICHIA COLI K-12
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb7khi.pdb ABCDEFM XY 0
Biounits:
7khi.pdb1.pdb ABCDEFM XY 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_A_bac Domain P0A7Z4_58-186 9.2e-24 1 No_clan A 58 178   
RNA_pol_L Domain P0A7Z4_29-228 1.2e-22 1 CL0509 A 29 228   
RNA_pol_A_bac Domain P0A7Z4_58-186 8.6e-24 1 No_clan B 58 185   
RNA_pol_L Domain P0A7Z4_29-228 1.1e-22 1 CL0509 B 29 228   
RNA_pol_Rpb2_6 Domain P0A8V2_717-1264 3.3e-160 1 CL0410 C 717 1264   
RNA_pol_Rpb2_3 Domain P0A8V2_513-581 1.7e-29 1 No_clan C 513 581   
RNA_pol_Rpb2_45 Domain P0A8V2_591-656 2.1e-27 1 No_clan C 591 656   
RNA_pol_Rpb2_7 Domain P0A8V2_1266-1342 3.1e-27 1 No_clan C 1266 1342   
RNA_pol_Rpb2_2 Domain P0A8V2_329-454 6.1e-15 1 No_clan C 329 454   
RNA_pol_Rpb2_2 Domain P0A8V2_151-276 2.7e-07 1 No_clan C 151 276   
RNA_pol_Rpb1_1 Domain P0A8T7_15-342 7.9e-90 1 No_clan D 14 342   
RNA_pol_Rpb1_5 Domain P0A8T7_766-1317 6e-78 1 No_clan D 766 1317   
RNA_pol_Rpb1_2 Domain P0A8T7_386-486 4.3e-27 1 No_clan D 386 486   
RNA_pol_Rpb1_3 Domain P0A8T7_489-644 5.2e-27 1 No_clan D 489 644   
RNA_pol_Rpb1_4 Domain P0A8T7_673-764 1.5e-18 1 No_clan D 673 764   
RNA_pol_Rpb1_2 Domain P0A8T7_344-401 1.3e-07 1 No_clan D 344 401   
Sigma70_ner Domain P00579_137-348 3e-45 1 CL0123 F 167 348   
Sigma70_r2 Domain P00579_379-449 1.4e-21 1 CL0123 F 379 449 XY  H-Bb H-Mj H-Mn 
Sigma70_r4 Domain P00579_547-600 4.6e-19 1 CL0123 F 547 600 XY  H-Bb H-Mj L-Bb 
Sigma70_ner Domain 3.7e-09 1 CL0123 F 137 215
RNA_pol_Rpb2_1 Family P0A8V2_26-500 2.6e-58 1 No_clan C 26 500   
RNA_pol_Rpb6 Family P0A800_8-60 3.7e-17 1 No_clan E 8 60   
Sigma70_r3 Family P00579_458-535 1e-29 1 CL0123 F 458 535 XY  H-Bb 
Sigma70_r1_1 Family P00579_2-79 3.9e-29 1 No_clan F 6 83   
Sigma70_r1_2 Family P00579_96-128 2.5e-12 1 No_clan F 96 128 X   
zf-dskA_traR Family P0ABS1_109-144 5.5e-10 1 CL0167 M 109 144   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
7khi.pdb1.pdb:   [ download sequences in FASTA format ]
X (dna): 
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Y (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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M (protein): 
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