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Nucleic atom dist Protein atom
U7:C.OP2/1 2.87 LYS111:A.NZ/1
A9:C.O3'/1 3.36 LYS110:A.NZ/1
A9:C.O2'/1 2.85 LYS110:A.NZ/1
A9:C.N3/1 3.22 LYS110:A.NZ/1
G10:C.O4'/1 3.29 LYS110:A.NZ/1
G10:C.N7/1 2.68 LYS113:A.NZ/1
G10:C.O6/1 3.35 LYS113:A.NZ/1
U11:C.OP1/1 2.68 LYS42:A.N/1
U16:C.OP1/1 3.09 ARG65:A.NH2/1
U16:C.OP2/1 2.62 ARG65:A.NH1/1
U16:C.OP2/1 2.82 ARG65:A.NH2/1
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Nucleic atom d_n2w water d_p2w Protein atom
A15:C.O3'/1 2.98 199:A/1 2.86 THR52:A.OG1/1
A15:C.O2'/1 2.87 199:A/1 2.86 THR52:A.OG1/1
A15:C.N6/1 2.89 216:A/1 2.77 ASP40:A.OD2/1
G18:C.OP1/1 2.94 214:A/1 2.94 ARG120:A.NH2/1
G18:C.OP1/1 2.94 214:A/1 2.85 HIS136:A.NE2/1
G18:C.OP1/1 2.57 440:C/1 2.99 GLN141:A.NE2/1
G18:C.OP1/1 2.57 440:C/1 3.21 GLY142:A.N/1
G18:C.OP2/1 2.91 237:A/1 2.55 TYR47:A.OH/1
G18:C.N7/1 3.22 208:A/1 2.91 SER46:A.OG/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2021

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