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Nucleic atom dist Protein atom
U7:D.OP2/1 2.63 LYS111:B.NZ/1
G10:D.OP2/1 2.74 LYS110:B.NZ/1
G10:D.N7/1 2.82 LYS113:B.NZ/1
U11:D.OP1/1 2.67 LYS42:B.N/1
U16:D.OP1/1 3.22 ARG65:B.NH2/1
U16:D.OP2/1 3.02 ARG65:B.NH1/1
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Nucleic atom d_n2w water d_p2w Protein atom
U7:D.OP2/1 2.76 408:D/1 2.81 LYS110:B.NZ/1
A9:D.N3/1 2.81 433:D/1 3.02 LYS110:B.NZ/1
G10:D.O4'/1 2.79 433:D/1 3.02 LYS110:B.NZ/1
U11:D.OP1/1 2.88 430:D/1 2.96 ASP40:B.O/1
A12:D.OP1/1 2.6 438:D/1 3 GLN83:B.NE2/1
C13:D.OP2/1 2.6 438:D/1 3 GLN83:B.NE2/1
A15:D.O3'/1 3.21 182:B/1 2.51 THR52:B.OG1/1
A15:D.O2'/1 3.04 182:B/1 2.51 THR52:B.OG1/1
A15:D.O2'/1 2.66 158:B/1 2.38 TYR55:B.O/1
A15:D.N6/1 2.77 172:B/1 2.72 ASP40:B.OD2/1
G18:D.OP1/1 2.71 449:D/1 3.01 ARG120:B.NH2/1
G18:D.OP1/1 2.71 449:D/1 2.79 HIS136:B.NE2/1
G18:D.OP2/1 2.93 220:B/1 2.73 TYR47:B.OH/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2021

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