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Nucleic atom dist Protein atom
DT5:B.O3'/1 3.34 LYS254:A.NZ/1
DT6:B.OP1/1 2.67 LYS254:A.NZ/1
3DR7:B.OP1/1 2.73 ASN171:A.ND2/1
3DR7:B.OP1/1 2.66 TYR238:A.OH/1
3DR7:B.OP2/1 2.99 ARG260:A.NH2/1
DT8:B.OP1/1 2.63 LYS57:A.NZ/1
DT8:B.OP2/1 2.9 ASN171:A.N/1
DT8:B.OP2/1 2.97 ARG260:A.NH2/1
DT9:B.OP1/1 2.8 HIS72:A.NE2/1
DT9:B.OP2/1 2.82 LYS57:A.NZ/1
DC23:C.O2/1 2.57 ARG109:A.NE/1
DC23:C.N3/1 2.88 ARG109:A.NH2/1
DA24:C.OP1/1 2.98 LYS110:A.NZ/1
DA25:C.OP1/1 3.01 LYS90:A.NZ/1
DA25:C.OP1/1 3.11 HIS91:A.NE2/1
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Nucleic atom d_n2w water d_p2w Protein atom
DT6:B.OP2/1 3.14 102:B/1 3.01 ARG260:A.NE/1
DT6:B.OP2/1 3.14 102:B/1 2.99 GLY261:A.N/1
3DR7:B.OP2/1 2.45 102:B/1 3.32 ASN171:A.ND2/1
3DR7:B.OP2/1 2.45 102:B/1 3.01 ARG260:A.NE/1
3DR7:B.OP2/1 2.45 102:B/1 2.99 GLY261:A.N/1
DT8:B.O4/1 3.27 415:A/1 2.84 ARG109:A.NH1/1
DT9:B.OP1/1 2.94 409:A/1 3.12 LYS57:A.N/1
DT9:B.OP1/1 2.94 409:A/1 2.85 GLN163:A.OE1/1
DG19:C.OP2/1 2.33 103:C/1 2.65 GLY259:A.N/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2021

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