Interaction mode
Mode:  H-Bb H-Mj H-Mn L-Bb L-Mj L-Mn 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the major groove of DNA (Mj), helix(es) (H) with the minor groove of DNA (Mn), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj), loop(s) (L) with the minor groove of DNA (Mn).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
RAG1
(PF12940.9)
3jby 6b40 6cg0 6dbi 6dbj 6oes 6oet 6xnx 6xny 6xnz 17
UDG
(PF03167.21)
2ddg 2dem 2dp6 5t2w 4
HhH-GPD
(PF00730.27)
4b21 5kn8 2
YqaJ
(PF09588.12)
3slp 4wuz 2
AGT
(PF11440.10)
1y6g 1y8z 2
XPG_N
(PF00752.19)
1rxw 1
RNase_T
(PF00929.26)
6a47 1
RNA_pol
(PF00940.21)
4boc 1
Exo_endo_phos
(PF03372.25)
6bov 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Very short patch repair (VSR) endonuclease
(c.52.1.15)
1cw0 1
DNA-binding domain of intron-encoded endonucleases
(d.285.1.1)
1u3e 1
© NPIDB team 2003 - 2021

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