Interaction mode
Mode:  H-Bb H-Mj L-Mj 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the major groove of DNA (Mj), loop(s) (L) with the major groove of DNA (Mj).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
zf-H2C2_2
(PF13465.8)
1a1f 1f2i 1p47 1ubd 2kmk 2prt 2wbu 4m9e 4r2c 4r2s 5ke6 5ke7 5ke8 5kea 5keb 5wjq 5yef 5yel 6b0q 6b0r 6ki6 23
Sigma70_r4
(PF04545.18)
6n4c 6oul 6wr6 3
CRISPR_Cas2
(PF09827.11)
5xvo 5xvp 3
TrmB
(PF01978.21)
5bpd 5bpi 2
DBD_Tnp_Hermes
(PF10683.11)
4d1q 6dwz 2
Pou
(PF00157.19)
3d1n 4
HLH
(PF00010.28)
4ati 1
Homeodomain
(PF00046.31)
1le8 1
TetR_N
(PF00440.25)
6nsr 1
RAG1
(PF12940.9)
3jbw 1
FOXP-CC
(PF16159.7)
4r2s 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Classic zinc finger, C2H2
(g.37.1.1)
1a1f 1a1g 1a1h 1a1i 1a1j 1a1k 1a1l 1f2i 1jk1 1jk2 1llm 1p47 1ubd 2drp 22
Homeodomain
(a.4.1.1)
1le8 1
Trp repressor, TrpR
(a.4.12.1)
1rcs 1
© NPIDB team 2003 - 2021

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