Interaction mode
Mode:  H-Bb H-Mj S-Bb S-Mj L-Bb 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the major groove of DNA (Mj), β-strand(s) (S) with DNA backbone atoms (Bb), β-strand(s) (S) with the major groove of DNA (Mj), loop(s) (L) with DNA backbone atoms (Bb).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
zf-C4
(PF00105.20)
1a6y 1cit 1dsz 1kb2 1kb6 1r4r 2han 3fyl 3g6r 3g9m 3m9e 4cn2 4cn5 4hn5 4hn6 4nqa 4tnt 5cbx 5cby 5cbz 5cc0 5cc1 5e6b 5e6c 5krb 5va0 6bse 6l6l 6l6q 6lc1 6xwg 40
Arc
(PF03869.16)
1bdt 1bdv 1par 4
AP2
(PF00847.22)
3igm 1
Penicillinase_R
(PF03965.18)
2p7c 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Arc/Mnt-like phage repressors
(a.43.1.1)
1bdt 1bdv 1par 8
Nuclear receptor
(g.39.1.2)
1a6y 1kb6 1r4r 3
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