Interaction mode
Mode:  H-Bb H-Mj S-Bb S-Mn L-Bb L-Mj L-Mn 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the major groove of DNA (Mj), β-strand(s) (S) with DNA backbone atoms (Bb), β-strand(s) (S) with the minor groove of DNA (Mn), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj), loop(s) (L) with the minor groove of DNA (Mn).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
Phage_integrase
(PF00589.24)
1crx 1drg 1f44 2hof 2hoi 3c29 3crx 3mgv 12
Cdc6_C
(PF09079.13)
2qby 2v1u 2
Zn_clus
(PF00172.20)
1zme 1
Transposase_mut
(PF00872.20)
6xgx 1
MarR
(PF01047.24)
6jbx 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Lambda integrase-like, catalytic core
(d.163.1.1)
1crx 2hoi 2
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