Interaction mode
Mode:  H-Bb H-Mn S-Bb L-Bb 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the minor groove of DNA (Mn), β-strand(s) (S) with DNA backbone atoms (Bb), loop(s) (L) with DNA backbone atoms (Bb).
Pfam domains
Export table
Pfam Domain Family PDB entries Number of structures
DNA_pol_B_thumb
(PF14791.8)
2bpf 3rjk 4f5r 4gxj 4k4g 4k4h 4k4i 4o5k 4ub5 4z6c 4z6f 5eoz 5vrw 5vrx 5wnx 6cu9 6e3w 18
IMS
(PF00817.22)
2asd 2fln 2rdj 4ebc 4ebd 4qwd 5ulw 5ulx 8
NTP_transf_2
(PF01909.25)
5hrf 5hri 5hrl 5xm8 6
DNA_ligase_A_M
(PF01068.23)
6dt1 6imk 2
Endonuclease_1
(PF04231.15)
2ivk 2
DNA_pol_B
(PF00136.23)
2p5g 1
DNA_gyraseB
(PF00204.27)
5j5p 1
Endonuclease_NS
(PF01223.25)
5t4i 1
DNA_ligase_aden
(PF01653.20)
4glx 1
Y1_Tnp
(PF01797.18)
2xm3 1
Endonuclease_7
(PF02945.17)
2qnc 1
DNA_pol_B_exo1
(PF03104.21)
5gnq 1
zf-His_Me_endon
(PF05551.13)
1ipp 1


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