Interaction mode
Mode:  H-Bb H-Mn S-Bb L-Bb L-Mn 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the minor groove of DNA (Mn), β-strand(s) (S) with DNA backbone atoms (Bb), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the minor groove of DNA (Mn).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
DNA_pol_B_thumb
(PF14791.8)
1bpy 1mq3 1xsn 2fmp 2fmq 2fms 2iso 2isp 2pfn 2pfo 2pfp 2pxi 3auo 3c2k 3c5f 3c5g 3gdx 3hw8 3hwt 3jpn 3jpo 3jpp 3jpq 3jpr 3jps 3jpt 3lk9 3mby 3mdc 3mgi 3pmn 3pnc 3rh4 3rh5 3rh6 3rjf 3rjh 3rji 3tfr 3tfs 3upq 3uq0 4do9 4doa 4dob 4doc 4jwm 4jwn 4k4h 4kld 4kle 4klf 4nlk 4nxz 4pgx 4php 4r65 4rpx 4rq3 4rt2 4rt3 4tuq 4uaw 4uay 4uaz 4ub4 4ubb 4ubc 4ymo 4z6e 5bol 5cwr 5hrf 5j29 5j2a 5j2d 5j2f 5j2j 5j2k 5tb8 5u2r 5ugn 5ugp 5v1n 5v1p 5v1r 5vez 5vry 5wny 5wnz 5wo0 6bel 6bem 6bte 6btf 6cpq 6cr3 6cr4 6cr5 6cr7 6cr8 6cr9 6cti 6ctk 6ctl 6ctn 6cto 6ctr 6ctt 6ctu 6ctv 6ctw 6ctx 6dic 6n2s 6n2t 6nku 6nkv 6nkw 6nkx 6nky 6nkz 6nl0 6uol 129
DNA_pol_A
(PF00476.22)
1lv5 1nke 1qsy 1qtm 1skw 1sl0 1sl1 1sl2 1t8e 1tk0 1tk8 1tkd 1u47 1zyq 2ajq 2hhu 2hhw 2hvh 2hw3 3hp6 3ht3 3ktq 3m8r 3m8s 3ojs 3oju 3pv8 3px0 3px4 3px6 3py8 3rtv 3sv4 3t3f 4b9m 4b9t 4b9u 4b9v 4bwj 4df4 4df8 4dfj 4dfk 4dfm 4dfp 4dle 4dlg 4dqi 4dqp 4dqq 4dqr 4dqs 4ds4 4dse 4dsf 4elt 4elu 4elv 4ez6 4f2r 4f2s 4f3o 4f4k 4n56 4n5s 4o0i 4yfu 5e41 5nkl 5o7t 5oxj 5szt 5ytc 5ytd 5yte 5ytf 5ytg 5yth 5z3n 6fbc 6fbd 6fbh 6fbi 6p7e 6q4u 6q4v 6ueu 6ur9 6us5 100
DNA_pol_B
(PF00136.23)
1ig9 1q9x 1q9y 2ozm 2ozs 3k59 3kd1 3l8b 3lds 3nci 3ngi 3nhg 3qew 3qex 3qnn 3qno 3scx 3sq1 3sq2 3tae 3uiq 4ail 4dtr 4dtu 4du1 4du4 4e3s 4fj9 4fjg 4fji 4fjj 4fjk 4fjl 4fjm 4fjx 4fk2 4fk4 4j2a 4j2b 4j2d 4j2e 4k8x 4m3r 4m8o 4ptf 5gnq 5omf 5omq 5omv 6h1v 6p1h 6q4t 54
RVT_1
(PF00078.29)
1qai 1ztt 1ztw 2fjv 6an2 5
IMS
(PF00817.22)
3q8p 3q8r 5kt3 3
Toprim
(PF01751.24)
3qx3 5zrf 4
DNA_ligase_A_M
(PF01068.23)
6rce 1
DNA_ligase_aden
(PF01653.20)
2owo 1
N6_Mtase
(PF02384.18)
4xqk 1
DNA_ligase_A_C
(PF04679.17)
6p0e 1


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