Interaction mode
Mode:  H-Bb S-Bb 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), β-strand(s) (S) with DNA backbone atoms (Bb).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
IMS
(PF00817.22)
1s0m 1s97 2atl 2r8i 2uvr 3gij 3gik 3gil 3m9n 3ohb 3rax 3rb4 3rbd 3rbe 3t5l 3v6h 4eyh 4eyi 4f4w 4ir9 4irk 4nlg 4q43 4q8f 4r8u 5c5j 5dga 5dgb 5wm1 5wm8 5wmb 5yuv 5yuw 5yux 5yuy 5yv0 5yyd 6cst 6ig1 6m7o 6m7u 6m7v 6x6z 6x71 6x73 6x74 6x75 6x76 55
Histone
(PF00125.26)
3wtp 3x1s 5b1m 5wcu 6hkt 6iy2 6kiu 6kw3 6nzo 6px3 6t7b 6t90 6yov 14
RNA_pol_Rpb1_1
(PF04997.14)
4y7n 5iy7 5iy8 5iyb 5iyc 6uq1 6
CENP-T_C
(PF15511.8)
6kw5 6m4g 7crp 7crq 7crr 5
WGR
(PF05406.17)
4dqy 4opx 4oqa 4oqb 8
RVT_connect
(PF06815.15)
1rtd 3jyt 5j2p 6wpf 4
IMS_C
(PF11799.10)
1jxl 2r8j 3qz8 4f50 4
DNA_pol_B_thumb
(PF14791.8)
2bpg 2ihm 3uxp 4k4i 4
IN_DBD_C
(PF00552.23)
3jca 5u1c 4
CENP-X
(PF09415.12)
4ndy 4ne1 3
CBFD_NFYB_HMF
(PF00808.25)
6y39 2
Linker_histone
(PF00538.21)
7k5y 1
XPG_I
(PF00867.20)
4q10 1
Hjc
(PF01870.20)
2wj0 1
HIN
(PF02760.17)
3rnu 1
Endonuc-EcoRV
(PF09233.13)
2rve 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Nucleosome core histones
(a.22.1.1)
1kx4 3b6f 3
CopG-like
(a.43.1.3)
1ea4 1
© NPIDB team 2003 - 2021

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