Interaction mode
Mode:  H-Bb S-Bb S-Mj L-Bb 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), β-strand(s) (S) with DNA backbone atoms (Bb), β-strand(s) (S) with the major groove of DNA (Mj), loop(s) (L) with DNA backbone atoms (Bb).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
IMS_C
(PF11799.10)
1rys 1s0m 1s0o 2agp 2asd 2asj 2bqu 2c28 2c2d 2c2r 2ia6 2ibk 2j6u 2r8g 2r8i 2rdj 2v4q 2wtf 2xcp 3bjy 3g6x 3gij 3gqc 3gv5 3gv8 3h40 3khr 3mfh 3mfi 3oha 3ohb 3osn 3pr4 3q8p 3q8q 3q8s 3raq 3rax 3rb0 3rb3 3rb4 3rb6 3rbd 3si8 3t5h 3t5j 3t5l 4dl5 4dl6 4ebe 4ecq 4ecs 4ect 4ecv 4ecx 4ecy 4ed0 4ed1 4ed2 4ed8 4eey 4eyh 4eyi 4f4x 4fbu 4fs2 4g3i 4ir1 4irk 4j9r 4o3r 4q43 4q45 4qw8 4qw9 4qwa 4qwb 4ru9 4tqr 4tqs 4yp3 4yqw 4yr3 5c5j 5dlg 5ewf 5ewg 5f9l 5jum 5kfa 5kfi 5kfj 5kfk 5kfs 5l9x 5ulx 5wm1 5wmb 5yur 5yus 5yut 5yuu 5yuv 5yuw 5yux 5yuy 5yuz 5yv0 5yv1 5yv2 5yv3 5yyd 5yye 5zlv 6ig1 6m7o 6v5k 6x6z 6x70 6x71 6x73 6x74 6x75 6x77 144
MetJ
(PF01340.22)
1cma 1mj2 1mjm 1mjo 1mjp 1mjq 17
LAGLIDADG_3
(PF14528.8)
4d6n 4unb 4unc 4ut0 7
RHH_1
(PF01402.23)
2hzv 6mrj 8
AFT
(PF08731.13)
4lmg 3
MatP_C
(PF17414.4)
4d8j 3
STAT_bind
(PF02864.17)
6qhd 2
RHD_DNA_bind
(PF00554.24)
2ram 1
Y1_Tnp
(PF01797.18)
2xma 1
Arc
(PF03869.16)
3qoq 1
zf-His_Me_endon
(PF05551.13)
1a73 1
Omega_Repress
(PF07764.13)
2bnz 1
Arm-DNA-bind_3
(PF13356.8)
3rmp 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Met repressor, MetJ (MetR)
(a.43.1.5)
1cma 1mj2 1mjo 1mjp 1mjq 13
CopG-like
(a.43.1.3)
1ea4 2hzv 9
Intron-encoded homing endonucleases
(d.4.1.3)
1a73 1evw 4
Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
(e.15.1.1)
1a35 1k4t 2
GCC-box binding domain
(d.10.1.2)
1gcc 1
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