Interaction mode
Mode:  H-Bb S-Bb S-Mj L-Bb L-Mn 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), β-strand(s) (S) with DNA backbone atoms (Bb), β-strand(s) (S) with the major groove of DNA (Mj), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the minor groove of DNA (Mn).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
DNA_ligase_A_M
(PF01068.23)
6p09 6p0a 6p0b 6p0c 6p0d 6p0e 6q1v 7
Ter
(PF05472.13)
2ewj 4xr2 2
DNA_pol_B
(PF00136.23)
3k57 1
Topoisom_I_N
(PF02919.17)
1a35 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
C5 cytosine-specific DNA methylase, DCM
(c.66.1.26)
2c7o 4mht 5mht 3
Replication terminator protein (Tus)
(e.2.1.1)
1ecr 2ewj 2i06 3
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