Interaction mode
Mode:  H-Bb S-Bb S-Mn L-Bb 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), β-strand(s) (S) with DNA backbone atoms (Bb), β-strand(s) (S) with the minor groove of DNA (Mn), loop(s) (L) with DNA backbone atoms (Bb).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
Histone
(PF00125.26)
1m1a 1s32 3afa 3av1 3x1t 4jjn 4x23 5b0z 5jrg 5wcu 5x7x 5y0c 5y0d 5z30 6hkt 6jou 6jr0 6jr1 6kvd 6m3v 22
RVT_1
(PF00078.29)
1n5y 1r0a 3kk1 3v4i 3v6d 5txm 7
IMS
(PF00817.22)
4dl2 4dl3 4dl5 4j9p 4j9r 6d0m 6
CENP-T_C
(PF15511.8)
5x7x 5y0d 6hkt 3
IMS_C
(PF11799.10)
3v6h 3v6j 3
Bac_DNA_binding
(PF00216.23)
1p71 1p78 2
DNA_topoisoIV
(PF00521.22)
2xcr 6rku 2
MutS_I
(PF01624.22)
1fw6 1nne 2
DNA_pol3_alpha
(PF07733.14)
3f2c 3f2d 2
DNA_pol_B_palm
(PF14792.8)
4p4p 4ph5 2
WGR
(PF05406.17)
6f5b 2
Linker_histone
(PF00538.21)
7k60 1
DNA_ligase_A_C
(PF04679.17)
3l2p 1
Endonuc-BglII
(PF09195.13)
2p0j 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
DNA repair protein MutS, domain I
(d.75.2.1)
1ewq 1fw6 1ng9 1nne 1oh5 1w7a 1wb9 1wbb 8
Nucleosome core histones
(a.22.1.1)
1m1a 1u35 2f8n 4
© NPIDB team 2003 - 2021

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