Interaction mode
Mode:  H-Mj L-Bb L-Mj 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with the major groove of DNA (Mj), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj).
Pfam domains
Export table
Pfam Domain Family PDB entries Number of structures
P53
(PF00870.20)
3q06 3vd0 3vd1 3vd2 7
LacI
(PF00356.23)
1jwl 3oqn 3
Zn_clus
(PF00172.20)
1d66 2hap 2
zf-CXXC
(PF02008.22)
3qmh 5vc9 2
zf-C4
(PF00105.20)
5e6d 1
RHD_DNA_bind
(PF00554.24)
1lei 1
CRISPR_Cas2
(PF09827.11)
5xvo 1
zf-H2C2_2
(PF13465.8)
5wjq 1
Cas5fv_helical
(PF20158.1)
5o6u 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
Export table
SCOP Domain Family PDB entries Number of structures
Zn2/Cys6 DNA-binding domain
(g.38.1.1)
1d66 1
© NPIDB team 2003 - 2021

text