Interaction mode
Mode:  S-Bb L-Bb L-Mj 
Description: Conserved protein-DNA contacts are provided by β-strand(s) (S) with DNA backbone atoms (Bb), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
Cas9_PI
(PF16595.7)
5b2r 5f9r 5fw1 5fw3 6aeb 6k4q 6k57 6o0x 6o0y 6o0z 10
IMS_C
(PF11799.10)
2au0 2oh2 3mr6 6m7t 6m7u 6m7v 6
Neil1-DNA_bind
(PF09292.12)
5itt 5itu 5ity 4
zf-FPG_IleRS
(PF06827.16)
2ea0 4pdg 2
zf-H2C2_2
(PF13465.8)
2wbs 6b0o 2
HIT
(PF01230.25)
3spd 4
zf-PARP
(PF00645.20)
4av1 2
Histone
(PF00125.26)
6om3 1
Bac_DNA_binding
(PF00216.23)
6oaj 1
RNA_pol
(PF00940.21)
6erp 1
zf-CXXC
(PF02008.22)
4nw3 1
T_Ag_DNA_bind
(PF02217.18)
5d9i 1
HIN
(PF02760.17)
3rn5 1
RAG2
(PF03089.16)
6xnz 1
DNA_pol_B_2
(PF03175.15)
2pzs 1
RecU
(PF03838.16)
5fdk 1
DNA_gyraseA_C
(PF03989.15)
6rkw 1
Hom_end
(PF05204.16)
1lws 1
RVT_connect
(PF06815.15)
6p1x 1
ParB
(PF08775.12)
2ntz 1
RE_Eco29kI
(PF09517.12)
3nic 1
CENP-T_C
(PF15511.8)
6om3 1
RE_AspBHI_N
(PF18062.3)
4r28 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Restriction endonuclease PvuII
(c.52.1.6)
2pvi 1
Intein endonuclease
(d.95.2.2)
1lws 1
Replication initiation protein E1
(d.89.1.2)
1ksx 4
© NPIDB team 2003 - 2021

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