Interaction mode
Mode:  S-Bb L-Bb L-Mj L-Mn 
Description: Conserved protein-DNA contacts are provided by β-strand(s) (S) with DNA backbone atoms (Bb), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj), loop(s) (L) with the minor groove of DNA (Mn).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
Fapy_DNA_glyco
(PF01149.26)
1k3w 1k3x 1k82 1kfv 1l1t 1l1z 1l2b 1l2c 1nnj 1pji 1pjj 1pm5 1r2y 1tdz 1xc8 2ea0 2f5q 2f5s 2opf 2oq4 2xzf 2xzu 3a46 3c58 3go8 3gp1 3gpp 3gpu 3gpy 3gq4 3jr4 3jr5 3twm 3vk7 4pcz 4pd2 4pdg 4pdi 5itr 5itt 5itu 5itx 5ity 6fbu 6h0s 6rnm 6rno 6rnr 6ro2 6rok 6rp0 6rp7 6tc9 68
MrcB_N
(PF12102.10)
3ssc 3ssd 3sse 6gcd 6gce 6gcf 12
AP_endonuc_2
(PF01261.26)
1qum 2nq9 2nqj 6ki3 4
Cas9_PI
(PF16595.7)
5fw2 6k4p 6k4s 6k4u 4
Transposase_1
(PF01359.20)
3hos 3hot 4r79 3
RE_Eco29kI
(PF09517.12)
3mx4 3nic 2
RecA
(PF00154.23)
7jy7 1
Mob_Pre
(PF01076.21)
5n2q 1
Topoisom_I_N
(PF02919.17)
1lpq 1
Exo_endo_phos
(PF03372.25)
1dnk 1
Vsr
(PF03852.17)
1odg 1
RQC
(PF09382.12)
4o3m 1
CRISPR_Cse1
(PF09481.12)
6c66 1
RPOL_N
(PF14700.8)
3e2e 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
N-terminal domain of MutM-like DNA repair proteins
(b.113.1.1)
1k3w 1kfv 2ea0 2opf 2oq4 6
Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
(e.15.1.1)
1lpq 1
© NPIDB team 2003 - 2021

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