Interaction mode
Mode:  S-Bb L-Bb L-Mn 
Description: Conserved protein-DNA contacts are provided by β-strand(s) (S) with DNA backbone atoms (Bb), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the minor groove of DNA (Mn).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
SH3_11
(PF18103.3)
3os1 3os2 3oy9 3oya 3oyb 3oyc 3oyd 3oye 3oyf 3oyg 3oyj 3oyk 3oyl 3oym 3oyn 3s3m 3s3n 3s3o 4bac 4bdy 4be0 4be1 4be2 4e7h 4e7i 4e7j 4e7k 4e7l 4ztf 4ztj 5frm 5fro 5mma 5no1 5uop 5uoq 36
DNA_pol_B
(PF00136.23)
2dy4 3rmb 3rmc 3sjj 3suq 3tab 3tae 3taf 3tag 4i9q 4ki6 6qib 6v93 20
Histone
(PF00125.26)
5wcu 6m44 2
Ku
(PF02735.18)
1jey 5y3r 2
Exo_endo_phos
(PF03372.25)
2dnj 3ga6 2
CRISPR_Cse1
(PF09481.12)
5h9e 5h9f 2
DNA_pol_B_thumb
(PF14791.8)
6crc 6ctj 2
SRA
(PF18491.3)
4par 4pba 2
RVT_1
(PF00078.29)
3kle 2
IMS
(PF00817.22)
6jum 1
PWWP
(PF00855.19)
6iis 1
DNA_ligase_A_M
(PF01068.23)
6bkg 1
Fapy_DNA_glyco
(PF01149.26)
4g4r 1
MutS_I
(PF01624.22)
3thz 1
Hjc
(PF01870.20)
2wj0 1
EVE
(PF01878.20)
5j3e 1
RQC
(PF09382.12)
4cgz 1
AAA_23
(PF13476.8)
5dac 1
DNA_pol_B_palm
(PF14792.8)
3c5f 1
CENP-T_C
(PF15511.8)
6jr0 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Prokaryotic DNA-bending protein
(a.55.1.1)
1ihf 1p71 2
N-terminal domain of MutM-like DNA repair proteins
(b.113.1.1)
1k82 2oq4 5
DNA-binding protein LAG-1 (CSL)
(b.42.7.1)
1ttu 3brf 2
Nucleosome core histones
(a.22.1.1)
1id3 1
© NPIDB team 2003 - 2021

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