Interaction mode
Mode:  S-Bb S-Mj L-Bb 
Description: Conserved protein-DNA contacts are provided by β-strand(s) (S) with DNA backbone atoms (Bb), β-strand(s) (S) with the major groove of DNA (Mj), loop(s) (L) with DNA backbone atoms (Bb).
Pfam domains
Export table
Pfam Domain Family PDB entries Number of structures
IMS_C
(PF11799.10)
1ryr 1s0n 1s0o 1s97 2agp 2aq4 2asd 2asj 2asl 2atl 2au0 2bq3 2br0 2c22 2c2e 2flp 2imw 2j6t 2jeg 2jei 2jej 2oh2 2r8h 2r8k 2rdj 2v4r 2w7o 2w7p 2w9a 2w9c 2xc9 2xca 2xgp 2xgq 3gii 3gij 3gik 3gil 3gim 3in5 3khg 3khh 3khl 3khr 3m9m 3osp 3pzp 3qz7 3raq 3rb4 3rb6 3rbd 3rbe 3t5k 3v6k 4f4w 4fbu 4gc6 4gc7 4jv1 4jv2 4qwc 4rua 4ruc 4rzr 4tqs 4u6p 4u7c 5t14 5w2a 5w2c 5wm8 6bs1 6cst 6jul 6jum 6jun 6juo 6jur 6jus 6l84 6m7p 6x72 6x76 96
WRKY
(PF03106.17)
2lex 6ir8 6j4e 6j4f 6j4g 5
Arm-DNA-bind_1
(PF09003.12)
1z1b 1z1g 5
ResIII
(PF04851.17)
6o8e 6o8f 3
zf-FPG_IleRS
(PF06827.16)
2f5o 3jr5 2
HTH_56
(PF18662.3)
5vfx 3
STAT_bind
(PF02864.17)
5d39 2
SMC_N
(PF02463.21)
6wge 1
RecU
(PF03838.16)
5fdk 1
Hom_end
(PF05204.16)
1lwt 1
GbpC
(PF08363.12)
6ged 1
Arm-DNA-bind_3
(PF13356.8)
3rmp 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
Export table
SCOP Domain Family PDB entries Number of structures
Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
(e.15.1.1)
1a31 1tl8 2
Rel/Dorsal transcription factors, DNA-binding domain
(b.2.5.3)
2ram 1
Intein endonuclease
(d.95.2.2)
1lwt 1
© NPIDB team 2003 - 2021

text