Interaction mode
Mode:  S-Bb S-Mj L-Bb L-Mj L-Mn 
Description: Conserved protein-DNA contacts are provided by β-strand(s) (S) with DNA backbone atoms (Bb), β-strand(s) (S) with the major groove of DNA (Mj), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj), loop(s) (L) with the minor groove of DNA (Mn).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
Runt
(PF00853.21)
1h9d 1hjb 1hjc 1io4 3wts 3wtt 3wtu 3wtv 3wtw 3wtx 3wty 3wu1 4l0y 4l0z 4l18 6vg8 6vgd 6vge 6vgg 30
Endonuc-HincII
(PF09226.13)
3e3y 3e40 3e41 3e42 3e43 3e44 3e45 9
Topoisom_I_N
(PF02919.17)
1a31 1a36 1ej9 1r49 1rr8 1sc7 2b9s 7
zf-PARP
(PF00645.20)
2n8a 3od8 3oda 11
THAP
(PF05485.14)
2ko0 2l1g 3kde 3
T-box
(PF00907.24)
5flv 5t1j 5
Gti1_Pac2
(PF09729.11)
4qtj 4qtk 3
DNA_methylase
(PF00145.19)
9mht 1
RecA
(PF00154.23)
3cmt 1
MutH
(PF02976.17)
2aor 1
LAGLIDADG_2
(PF03161.15)
5a0m 1
RecU
(PF03838.16)
5fdk 1
Endonuc-EcoRV
(PF09233.13)
2ge5 1
COE1_DBD
(PF16422.7)
3mlp 1
BfiI_DBD
(PF18243.3)
3zi5 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
RUNT domain
(b.2.5.6)
1h9d 1hjb 1hjc 1io4 7
Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
(e.15.1.1)
1a36 1ej9 1r49 3
© NPIDB team 2003 - 2021

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