Interaction mode
Mode:  S-Bb S-Mn L-Bb L-Mj L-Mn 
Description: Conserved protein-DNA contacts are provided by β-strand(s) (S) with DNA backbone atoms (Bb), β-strand(s) (S) with the minor groove of DNA (Mn), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj), loop(s) (L) with the minor groove of DNA (Mn).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
TBP
(PF00352.23)
1c9b 1cdw 1ngm 1nh2 1nvp 1qn3 1qn4 1qn5 1qn6 1qn7 1qn8 1qn9 1qna 1qnb 1qnc 1qne 1rm1 1tgh 1vol 1vtl 1vto 1ytb 1ytf 4v1n 4v1o 4wzs 5fur 5fyw 5iy7 5iyb 6cnb 6f40 6f41 6mzm 6njq 6ueo 6uep 6uer 78
Fapy_DNA_glyco
(PF01149.26)
4g4n 1
AP_endonuc_2
(PF01261.26)
6ki3 1
Cren7
(PF11520.10)
5wwc 1
PriA_3primeBD
(PF17764.3)
6dgd 1


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